STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
coaAPantothenate kinase; Identified by match to protein family HMM PF00485; match to protein family HMM TIGR00554. (306 aa)    
Predicted Functional Partners:
cdd
Cytidine deaminase; Identified by match to protein family HMM PF00383; match to protein family HMM TIGR01354.
    
  0.872
pyn
Pyrimidine-nucleoside phosphorylase; Identified by match to protein family HMM PF00591; match to protein family HMM PF02885; match to protein family HMM PF07831; match to protein family HMM TIGR02644.
    
  0.857
coaD
Pantetheine-phosphate adenylyltransferase; Identified by match to protein family HMM PF01467; match to protein family HMM TIGR00125; match to protein family HMM TIGR01510.
     
 0.754
coaB
Phosphopantothenate--cysteine ligase; Identified by match to protein family HMM PF04127; match to protein family HMM TIGR02114.
   
 
 0.737
coaC
Phosphopantothenoylcysteine decarboxylase; Identified by match to protein family HMM PF02441; match to protein family HMM TIGR02113.
   
 
 0.733
pyrF
Orotidine 5'-phosphate decarboxylase; Identified by match to protein family HMM PF00215; match to protein family HMM TIGR01740.
    
  0.702
dut
dUTP diphosphatase; Identified by match to protein family HMM PF00692.
 
  
  0.664
rpsT
Ribosomal protein S20; Identified by match to protein family HMM PF01649; match to protein family HMM TIGR00029.
     
 0.630
EFQ56640.1
Methyltransferase small domain protein; Identified by match to protein family HMM PF05175; match to protein family HMM PF08241; match to protein family HMM PF08242.
       0.608
deoC
Deoxyribose-phosphate aldolase; Identified by match to protein family HMM PF01791; match to protein family HMM TIGR00126.
       0.601
Your Current Organism:
Streptococcus downei
NCBI taxonomy Id: 904293
Other names: S. downei F0415, Streptococcus downei F0415, Streptococcus downei str. F0415, Streptococcus downei strain F0415
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.