STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFQ58072.1Flavin reductase; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF03358. (199 aa)    
Predicted Functional Partners:
EFQ56809.1
Identified by match to protein family HMM PF00890; match to protein family HMM PF02525; match to protein family HMM PF03358.
 
  
0.824
EFQ57849.1
Flavin reductase; Identified by match to protein family HMM PF03358.
 
   
0.741
EFQ57796.1
Identified by match to protein family HMM PF02424.
 
     0.722
EFQ56901.1
AMP-binding enzyme; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by match to protein family HMM PF00109; match to protein family HMM PF00501; match to protein family HMM PF00550; match to protein family HMM PF00668; match to protein family HMM PF00698; match to protein family HMM PF02801; match to protein family HMM TIGR01733.
  
 0.675
EFQ57375.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
  
  0.446
EFQ57434.1
Hypothetical protein.
  
  0.446
Your Current Organism:
Streptococcus downei
NCBI taxonomy Id: 904293
Other names: S. downei F0415, Streptococcus downei F0415, Streptococcus downei str. F0415, Streptococcus downei strain F0415
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.