STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EFQ57808.1Hypothetical protein. (349 aa)    
Predicted Functional Partners:
EFQ57714.1
Homoserine dehydrogenase; Identified by match to protein family HMM PF00742; match to protein family HMM PF01842; match to protein family HMM PF03447.
  
  
  0.749
dapA
Dihydrodipicolinate synthase; Identified by match to protein family HMM PF00701; match to protein family HMM TIGR00674.
  
  
  0.728
asd
Aspartate-semialdehyde dehydrogenase; Identified by match to protein family HMM PF01118; match to protein family HMM PF02774; match to protein family HMM TIGR01296.
    
  0.692
EFQ58030.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift.
       0.574
EFQ58156.1
Hypothetical protein; An automated process has identified a potential problem with this gene model; the current end5 and/or the end3 may need to extended or the current gene model may need to be merged with a neighboring gene model; the current gene model (or a revised gene model) may contain a frame shift; identified by glimmer; putative.
       0.574
EFQ56654.1
Matrixin; Identified by match to protein family HMM PF00413.
  
     0.526
gtfB
Accessory Sec system glycosyltransferase GtfB; Identified by match to protein family HMM TIGR02919.
 
    0.504
EFQ57983.1
Prevent-host-death family protein.
       0.495
EFQ58068.1
Addiction module toxin, Txe/YoeB family; Identified by match to protein family HMM TIGR02116.
       0.495
EFQ57326.1
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; Identified by match to protein family HMM PF00512; match to protein family HMM PF02518.
  
     0.413
Your Current Organism:
Streptococcus downei
NCBI taxonomy Id: 904293
Other names: S. downei F0415, Streptococcus downei F0415, Streptococcus downei str. F0415, Streptococcus downei strain F0415
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.