STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
csoRCopper-sensing transcriptional repressor CsoR; Identified by match to protein family HMM PF02583. (100 aa)    
Predicted Functional Partners:
EGL37170.1
Copper-exporting ATPase; Identified by match to protein family HMM PF00122; match to protein family HMM PF00403; match to protein family HMM PF00702; match to protein family HMM TIGR01494; match to protein family HMM TIGR01511; match to protein family HMM TIGR01525.
 
  
 0.949
EGL37564.1
Putative esterase; Identified by match to protein family HMM PF00756.
  
  
 0.662
EGL36209.1
Heavy metal-associated domain protein; Identified by match to protein family HMM PF00403.
  
  
 0.633
EGL37993.1
Hypothetical protein.
       0.628
fliN
Flagellar motor switch protein FliN; Identified by match to protein family HMM PF01052; match to protein family HMM PF04509; match to protein family HMM TIGR02480.
    
   0.625
hflB-2
ATP-dependent metallopeptidase HflB; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; Belongs to the AAA ATPase family. In the central section; belongs to the AAA ATPase family.
       0.615
EGL36145.1
Hypothetical protein.
       0.615
EGL36342.1
Hypothetical protein.
       0.465
EGL38236.1
Identified by match to protein family HMM PF00817.
       0.465
EGL36348.1
Sigma-70, region 4; Identified by match to protein family HMM PF04545; match to protein family HMM PF08281.
    
   0.457
Your Current Organism:
Oribacterium sp. F0425
NCBI taxonomy Id: 904296
Other names: O. sp. oral taxon 108 str. F0425, Oribacterium F0425, Oribacterium sp. oral taxon 108 str. F0425, Oribacterium sp. oral taxon 108 strain F0425
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.