Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LSM1LSM1 homolog, mRNA degradation associated. (133 aa)    
Predicted Functional Partners:
LSM5
LSM5 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSPSTP00000011875
annotation not available
   
 0.999
LSM6
LSM6 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
ENSPSTP00000021354
annotation not available
   
 0.999
LSM3
LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.
   
 0.999
DDX6
DEAD-box helicase 6.
   
 0.990
DCP2
Decapping mRNA 2.
    
 0.984
PATL2
PAT1 homolog 2.
    
 0.983
PATL1
PAT1 homolog 1, processing body mRNA decay factor.
    
 0.983
ENSPSTP00000002991
annotation not available
   
 
 0.962
Your Current Organism:
Pavo cristatus
NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl
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