TET1 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

TET1

Tet methylcytosine dioxygenase 1. (2237 aa)

Predicted Functional Partners:

DNMT3B

0.677

CXXC5

0.639

ENSPSTP00000026178

0.617

ARID4A

0.596

ARID4B

0.596

ENSPSTP00000008277

0.567

ENSPSTP00000024062

0.567

TTC6

0.504

ENSPSTP00000011727

0.482

DVL3

0.481

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ARID4A	ARID4B	ENSPSTP00000012196	ENSPSTP00000026176	AT-rich interaction domain 4A.	AT-rich interaction domain 4B.	0.676
ARID4A	ENSPSTP00000026178	ENSPSTP00000012196	ENSPSTP00000026178	AT-rich interaction domain 4A.	annotation not available	0.676
ARID4A	TET1	ENSPSTP00000012196	ENSPSTP00000000910	AT-rich interaction domain 4A.	Tet methylcytosine dioxygenase 1.	0.596
ARID4A	TTC6	ENSPSTP00000012196	ENSPSTP00000022199	AT-rich interaction domain 4A.	Tetratricopeptide repeat domain 6.	0.943
ARID4B	ARID4A	ENSPSTP00000026176	ENSPSTP00000012196	AT-rich interaction domain 4B.	AT-rich interaction domain 4A.	0.676
ARID4B	ENSPSTP00000026178	ENSPSTP00000026176	ENSPSTP00000026178	AT-rich interaction domain 4B.	annotation not available	0.676
ARID4B	TET1	ENSPSTP00000026176	ENSPSTP00000000910	AT-rich interaction domain 4B.	Tet methylcytosine dioxygenase 1.	0.596
ARID4B	TTC6	ENSPSTP00000026176	ENSPSTP00000022199	AT-rich interaction domain 4B.	Tetratricopeptide repeat domain 6.	0.943
CXXC5	DVL3	ENSPSTP00000002924	ENSPSTP00000008747	CXXC finger protein 5.	Dishevelled segment polarity protein 3.	0.734
CXXC5	TET1	ENSPSTP00000002924	ENSPSTP00000000910	CXXC finger protein 5.	Tet methylcytosine dioxygenase 1.	0.639
DNMT3B	ENSPSTP00000008277	ENSPSTP00000002657	ENSPSTP00000008277	DNA methyltransferase 3 beta.	annotation not available	0.454
DNMT3B	ENSPSTP00000024062	ENSPSTP00000002657	ENSPSTP00000024062	DNA methyltransferase 3 beta.	annotation not available	0.454
DNMT3B	TET1	ENSPSTP00000002657	ENSPSTP00000000910	DNA methyltransferase 3 beta.	Tet methylcytosine dioxygenase 1.	0.677
DVL3	CXXC5	ENSPSTP00000008747	ENSPSTP00000002924	Dishevelled segment polarity protein 3.	CXXC finger protein 5.	0.734
DVL3	TET1	ENSPSTP00000008747	ENSPSTP00000000910	Dishevelled segment polarity protein 3.	Tet methylcytosine dioxygenase 1.	0.481
ENSPSTP00000008277	DNMT3B	ENSPSTP00000008277	ENSPSTP00000002657	annotation not available	DNA methyltransferase 3 beta.	0.454
ENSPSTP00000008277	ENSPSTP00000024062	ENSPSTP00000008277	ENSPSTP00000024062	annotation not available	annotation not available	0.900
ENSPSTP00000008277	TET1	ENSPSTP00000008277	ENSPSTP00000000910	annotation not available	Tet methylcytosine dioxygenase 1.	0.567
ENSPSTP00000011727	TET1	ENSPSTP00000011727	ENSPSTP00000000910	annotation not available	Tet methylcytosine dioxygenase 1.	0.482
ENSPSTP00000024062	DNMT3B	ENSPSTP00000024062	ENSPSTP00000002657	annotation not available	DNA methyltransferase 3 beta.	0.454