TRMT44 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

TRMT44

tRNA methyltransferase 44 homolog. (625 aa)

Predicted Functional Partners:

ENSPSTP00000001026

0.708

TRMT6

0.627

TRMT13

0.623

WDR4

0.612

WDR6

0.611

EEF1AKNMT

0.611

ENSPSTP00000011271

0.597

PUS1

0.597

TRMT61A

0.584

FTSJ3

0.572

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
EEF1AKNMT	ENSPSTP00000001026	ENSPSTP00000014596	ENSPSTP00000001026	eEF1A lysine and N-terminal methyltransferase.	annotation not available	0.707
EEF1AKNMT	TRMT44	ENSPSTP00000014596	ENSPSTP00000001276	eEF1A lysine and N-terminal methyltransferase.	tRNA methyltransferase 44 homolog.	0.611
ENSPSTP00000001026	EEF1AKNMT	ENSPSTP00000001026	ENSPSTP00000014596	annotation not available	eEF1A lysine and N-terminal methyltransferase.	0.707
ENSPSTP00000001026	TRMT44	ENSPSTP00000001026	ENSPSTP00000001276	annotation not available	tRNA methyltransferase 44 homolog.	0.708
ENSPSTP00000011271	FTSJ3	ENSPSTP00000011271	ENSPSTP00000004939	annotation not available	FtsJ RNA 2'-O-methyltransferase 3.	0.542
ENSPSTP00000011271	TRMT44	ENSPSTP00000011271	ENSPSTP00000001276	annotation not available	tRNA methyltransferase 44 homolog.	0.597
ENSPSTP00000011271	TRMT6	ENSPSTP00000011271	ENSPSTP00000026072	annotation not available	tRNA methyltransferase 6.	0.576
ENSPSTP00000011271	TRMT61A	ENSPSTP00000011271	ENSPSTP00000025847	annotation not available	tRNA methyltransferase 61A.	0.698
ENSPSTP00000011271	WDR4	ENSPSTP00000011271	ENSPSTP00000005348	annotation not available	WD repeat domain 4.	0.944
FTSJ3	ENSPSTP00000011271	ENSPSTP00000004939	ENSPSTP00000011271	FtsJ RNA 2'-O-methyltransferase 3.	annotation not available	0.542
FTSJ3	PUS1	ENSPSTP00000004939	ENSPSTP00000015674	FtsJ RNA 2'-O-methyltransferase 3.	Pseudouridine synthase 1.	0.542
FTSJ3	TRMT13	ENSPSTP00000004939	ENSPSTP00000011292	FtsJ RNA 2'-O-methyltransferase 3.	tRNA methyltransferase 13 homolog.	0.430
FTSJ3	TRMT44	ENSPSTP00000004939	ENSPSTP00000001276	FtsJ RNA 2'-O-methyltransferase 3.	tRNA methyltransferase 44 homolog.	0.572
FTSJ3	TRMT6	ENSPSTP00000004939	ENSPSTP00000026072	FtsJ RNA 2'-O-methyltransferase 3.	tRNA methyltransferase 6.	0.901
FTSJ3	TRMT61A	ENSPSTP00000004939	ENSPSTP00000025847	FtsJ RNA 2'-O-methyltransferase 3.	tRNA methyltransferase 61A.	0.855
FTSJ3	WDR4	ENSPSTP00000004939	ENSPSTP00000005348	FtsJ RNA 2'-O-methyltransferase 3.	WD repeat domain 4.	0.829
FTSJ3	WDR6	ENSPSTP00000004939	ENSPSTP00000014077	FtsJ RNA 2'-O-methyltransferase 3.	WD repeat domain 6.	0.682
PUS1	FTSJ3	ENSPSTP00000015674	ENSPSTP00000004939	Pseudouridine synthase 1.	FtsJ RNA 2'-O-methyltransferase 3.	0.542
PUS1	TRMT44	ENSPSTP00000015674	ENSPSTP00000001276	Pseudouridine synthase 1.	tRNA methyltransferase 44 homolog.	0.597
PUS1	TRMT6	ENSPSTP00000015674	ENSPSTP00000026072	Pseudouridine synthase 1.	tRNA methyltransferase 6.	0.576