VIRMA protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Gene Fusion

Cooccurrence

Coexpression

Experiments

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[Homology]

Score

VIRMA

Vir like m6A methyltransferase associated. (1278 aa)

Predicted Functional Partners:

ENSPSTP00000025816

0.998

ENSPSTP00000023300

0.984

ENSPSTP00000015773

0.977

ENSPSTP00000015757

0.970

ENSPSTP00000021206

0.964

ENSPSTP00000022327

0.964

ALYREF

0.960

RBM15

0.918

ZC3H18

0.883

ENSPSTP00000020949

0.878

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ALYREF	ENSPSTP00000020949	ENSPSTP00000023716	ENSPSTP00000020949	Aly/REF export factor.	annotation not available	0.812
ALYREF	ENSPSTP00000022327	ENSPSTP00000023716	ENSPSTP00000022327	Aly/REF export factor.	annotation not available	0.523
ALYREF	ENSPSTP00000025816	ENSPSTP00000023716	ENSPSTP00000025816	Aly/REF export factor.	annotation not available	0.953
ALYREF	RBM15	ENSPSTP00000023716	ENSPSTP00000003178	Aly/REF export factor.	RNA binding motif protein 15.	0.812
ALYREF	VIRMA	ENSPSTP00000023716	ENSPSTP00000001344	Aly/REF export factor.	Vir like m6A methyltransferase associated.	0.960
ENSPSTP00000015757	ENSPSTP00000020949	ENSPSTP00000015757	ENSPSTP00000020949	annotation not available	annotation not available	0.854
ENSPSTP00000015757	ENSPSTP00000021206	ENSPSTP00000015757	ENSPSTP00000021206	annotation not available	annotation not available	0.991
ENSPSTP00000015757	ENSPSTP00000022327	ENSPSTP00000015757	ENSPSTP00000022327	annotation not available	annotation not available	0.987
ENSPSTP00000015757	ENSPSTP00000023300	ENSPSTP00000015757	ENSPSTP00000023300	annotation not available	annotation not available	0.937
ENSPSTP00000015757	ENSPSTP00000025816	ENSPSTP00000015757	ENSPSTP00000025816	annotation not available	annotation not available	0.971
ENSPSTP00000015757	RBM15	ENSPSTP00000015757	ENSPSTP00000003178	annotation not available	RNA binding motif protein 15.	0.854
ENSPSTP00000015757	VIRMA	ENSPSTP00000015757	ENSPSTP00000001344	annotation not available	Vir like m6A methyltransferase associated.	0.970
ENSPSTP00000015757	ZC3H18	ENSPSTP00000015757	ENSPSTP00000002622	annotation not available	Zinc finger CCCH-type containing 18.	0.561
ENSPSTP00000015773	ENSPSTP00000020949	ENSPSTP00000015773	ENSPSTP00000020949	annotation not available	annotation not available	0.892
ENSPSTP00000015773	ENSPSTP00000021206	ENSPSTP00000015773	ENSPSTP00000021206	annotation not available	annotation not available	0.991
ENSPSTP00000015773	ENSPSTP00000022327	ENSPSTP00000015773	ENSPSTP00000022327	annotation not available	annotation not available	0.998
ENSPSTP00000015773	ENSPSTP00000023300	ENSPSTP00000015773	ENSPSTP00000023300	annotation not available	annotation not available	0.937
ENSPSTP00000015773	ENSPSTP00000025816	ENSPSTP00000015773	ENSPSTP00000025816	annotation not available	annotation not available	0.973
ENSPSTP00000015773	RBM15	ENSPSTP00000015773	ENSPSTP00000003178	annotation not available	RNA binding motif protein 15.	0.933
ENSPSTP00000015773	VIRMA	ENSPSTP00000015773	ENSPSTP00000001344	annotation not available	Vir like m6A methyltransferase associated.	0.977