Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
UPF3BUPF3B regulator of nonsense mediated mRNA decay. (368 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
    
 0.989
ENSPSTP00000014963
annotation not available
   
 0.981
ENSPSTP00000018775
annotation not available
   
 0.981
SMG5
SMG5 nonsense mediated mRNA decay factor.
    
 0.967
RNPS1
RNA binding protein with serine rich domain 1.
    
 0.964
ALYREF
Aly/REF export factor.
    
 0.951
MAGOH
Mago homolog, exon junction complex subunit.
    
 0.948
CASC3
CASC3 exon junction complex subunit.
    
 0.946
ENSPSTP00000000106
annotation not available
   
 0.917
ENSPSTP00000024088
annotation not available
   
 0.917
Your Current Organism:
Pavo cristatus
NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl
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