BRF2 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BRF2

BRF2 RNA polymerase III transcription initiation factor subunit. (415 aa)

Predicted Functional Partners:

ENSPSTP00000022729

0.996

GTF3C3

0.995

BRF1

0.962

GTF3C5

0.962

POLR3F

0.958

GTF3C2

0.941

POLR2K

0.921

POLR3C

0.912

ENSPSTP00000004132

0.908

ENSPSTP00000004923

0.891

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BRF1	BRF2	ENSPSTP00000015162	ENSPSTP00000001580	BRF1 RNA polymerase III transcription initiation factor subunit.	BRF2 RNA polymerase III transcription initiation factor subunit.	0.962
BRF1	ENSPSTP00000004132	ENSPSTP00000015162	ENSPSTP00000004132	BRF1 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.990
BRF1	ENSPSTP00000004923	ENSPSTP00000015162	ENSPSTP00000004923	BRF1 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.891
BRF1	ENSPSTP00000022729	ENSPSTP00000015162	ENSPSTP00000022729	BRF1 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.999
BRF1	GTF3C2	ENSPSTP00000015162	ENSPSTP00000026438	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.943
BRF1	GTF3C3	ENSPSTP00000015162	ENSPSTP00000003343	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.999
BRF1	GTF3C5	ENSPSTP00000015162	ENSPSTP00000022145	BRF1 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.968
BRF1	POLR2K	ENSPSTP00000015162	ENSPSTP00000008927	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit K.	0.991
BRF1	POLR3C	ENSPSTP00000015162	ENSPSTP00000022160	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C.	0.976
BRF1	POLR3F	ENSPSTP00000015162	ENSPSTP00000012675	BRF1 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit F.	0.997
BRF2	BRF1	ENSPSTP00000001580	ENSPSTP00000015162	BRF2 RNA polymerase III transcription initiation factor subunit.	BRF1 RNA polymerase III transcription initiation factor subunit.	0.962
BRF2	ENSPSTP00000004132	ENSPSTP00000001580	ENSPSTP00000004132	BRF2 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.908
BRF2	ENSPSTP00000004923	ENSPSTP00000001580	ENSPSTP00000004923	BRF2 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.891
BRF2	ENSPSTP00000022729	ENSPSTP00000001580	ENSPSTP00000022729	BRF2 RNA polymerase III transcription initiation factor subunit.	annotation not available	0.996
BRF2	GTF3C2	ENSPSTP00000001580	ENSPSTP00000026438	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 2.	0.941
BRF2	GTF3C3	ENSPSTP00000001580	ENSPSTP00000003343	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 3.	0.995
BRF2	GTF3C5	ENSPSTP00000001580	ENSPSTP00000022145	BRF2 RNA polymerase III transcription initiation factor subunit.	General transcription factor IIIC subunit 5.	0.962
BRF2	POLR2K	ENSPSTP00000001580	ENSPSTP00000008927	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase II subunit K.	0.921
BRF2	POLR3C	ENSPSTP00000001580	ENSPSTP00000022160	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit C.	0.912
BRF2	POLR3F	ENSPSTP00000001580	ENSPSTP00000012675	BRF2 RNA polymerase III transcription initiation factor subunit.	RNA polymerase III subunit F.	0.958