Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TRIM39Tripartite motif containing 39. (481 aa)    
Predicted Functional Partners:
DDX41
DEAD-box helicase 41.
    
 0.799
SQSTM1
Sequestosome 1.
    
 0.686
RO60
Ro60, Y RNA binding protein.
    
 0.653
CTLA4
Cytotoxic T-lymphocyte associated protein 4.
     
 0.625
CD28
CD28 molecule.
     
  0.620
ENSPSTP00000022425
annotation not available
   
 0.599
ENSPSTP00000023137
annotation not available
   
 0.599
TMEM52
Transmembrane protein 52.
      
 0.574
ENSPSTP00000014017
annotation not available
    
  0.568
TRIM36
Tripartite motif containing 36.
      
 0.553
Your Current Organism:
Pavo cristatus
NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl
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