OTUD3 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

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Co-occurrence

Co-expression

Experiments

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[Homology]

Score

OTUD3

OTU deubiquitinase 3. (366 aa)

Predicted Functional Partners:

ENSPSTP00000005905

0.906

ENSPSTP00000021572

0.906

MRPL20

0.903

MRPL32

0.901

MRPS6

0.893

MRPS7

0.892

MRPS16

0.887

RPL23

0.886

RPS11

0.881

ENSPSTP00000010161

0.878

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPSTP00000005905	OTUD3	ENSPSTP00000005905	ENSPSTP00000002033	annotation not available	OTU deubiquitinase 3.	0.906
ENSPSTP00000010161	MRPL20	ENSPSTP00000010161	ENSPSTP00000025470	annotation not available	Mitochondrial ribosomal protein L20.	0.984
ENSPSTP00000010161	MRPL32	ENSPSTP00000010161	ENSPSTP00000017488	annotation not available	Mitochondrial ribosomal protein L32.	0.979
ENSPSTP00000010161	MRPS16	ENSPSTP00000010161	ENSPSTP00000006356	annotation not available	Mitochondrial ribosomal protein S16.	0.982
ENSPSTP00000010161	MRPS6	ENSPSTP00000010161	ENSPSTP00000008248	annotation not available	Mitochondrial ribosomal protein S6.	0.984
ENSPSTP00000010161	MRPS7	ENSPSTP00000010161	ENSPSTP00000002992	annotation not available	Mitochondrial ribosomal protein S7.	0.998
ENSPSTP00000010161	OTUD3	ENSPSTP00000010161	ENSPSTP00000002033	annotation not available	OTU deubiquitinase 3.	0.878
ENSPSTP00000010161	RPL23	ENSPSTP00000010161	ENSPSTP00000005310	annotation not available	Ribosomal protein L23.	0.999
ENSPSTP00000010161	RPS11	ENSPSTP00000010161	ENSPSTP00000012530	annotation not available	Ribosomal protein S11.	0.999
ENSPSTP00000021572	OTUD3	ENSPSTP00000021572	ENSPSTP00000002033	annotation not available	OTU deubiquitinase 3.	0.906
MRPL20	ENSPSTP00000010161	ENSPSTP00000025470	ENSPSTP00000010161	Mitochondrial ribosomal protein L20.	annotation not available	0.984
MRPL20	MRPL32	ENSPSTP00000025470	ENSPSTP00000017488	Mitochondrial ribosomal protein L20.	Mitochondrial ribosomal protein L32.	0.997
MRPL20	MRPS16	ENSPSTP00000025470	ENSPSTP00000006356	Mitochondrial ribosomal protein L20.	Mitochondrial ribosomal protein S16.	0.993
MRPL20	MRPS6	ENSPSTP00000025470	ENSPSTP00000008248	Mitochondrial ribosomal protein L20.	Mitochondrial ribosomal protein S6.	0.990
MRPL20	MRPS7	ENSPSTP00000025470	ENSPSTP00000002992	Mitochondrial ribosomal protein L20.	Mitochondrial ribosomal protein S7.	0.991
MRPL20	OTUD3	ENSPSTP00000025470	ENSPSTP00000002033	Mitochondrial ribosomal protein L20.	OTU deubiquitinase 3.	0.903
MRPL20	RPL23	ENSPSTP00000025470	ENSPSTP00000005310	Mitochondrial ribosomal protein L20.	Ribosomal protein L23.	0.992
MRPL20	RPS11	ENSPSTP00000025470	ENSPSTP00000012530	Mitochondrial ribosomal protein L20.	Ribosomal protein S11.	0.978
MRPL32	ENSPSTP00000010161	ENSPSTP00000017488	ENSPSTP00000010161	Mitochondrial ribosomal protein L32.	annotation not available	0.979
MRPL32	MRPL20	ENSPSTP00000017488	ENSPSTP00000025470	Mitochondrial ribosomal protein L32.	Mitochondrial ribosomal protein L20.	0.997