ITM2B protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

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[Homology]

Score

ITM2B

Integral membrane protein 2B. (250 aa)

Predicted Functional Partners:

ENSPSTP00000015973

0.919

ENSPSTP00000011089

0.875

ENSPSTP00000025328

0.875

TMEM59L

0.769

SCAMP1

0.717

TMEM59

0.697

ENSPSTP00000011528

0.691

ENSPSTP00000021023

0.691

ENSPSTP00000006702

0.679

CDADC1

0.679

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDADC1	ENSPSTP00000006702	ENSPSTP00000020380	ENSPSTP00000006702	Cytidine and dCMP deaminase domain containing 1.	annotation not available	0.529
CDADC1	ITM2B	ENSPSTP00000020380	ENSPSTP00000002109	Cytidine and dCMP deaminase domain containing 1.	Integral membrane protein 2B.	0.679
ENSPSTP00000006702	CDADC1	ENSPSTP00000006702	ENSPSTP00000020380	annotation not available	Cytidine and dCMP deaminase domain containing 1.	0.529
ENSPSTP00000006702	ITM2B	ENSPSTP00000006702	ENSPSTP00000002109	annotation not available	Integral membrane protein 2B.	0.679
ENSPSTP00000011089	ENSPSTP00000011528	ENSPSTP00000011089	ENSPSTP00000011528	annotation not available	annotation not available	0.956
ENSPSTP00000011089	ENSPSTP00000015973	ENSPSTP00000011089	ENSPSTP00000015973	annotation not available	annotation not available	0.580
ENSPSTP00000011089	ENSPSTP00000021023	ENSPSTP00000011089	ENSPSTP00000021023	annotation not available	annotation not available	0.956
ENSPSTP00000011089	ENSPSTP00000025328	ENSPSTP00000011089	ENSPSTP00000025328	annotation not available	annotation not available	0.922
ENSPSTP00000011089	ITM2B	ENSPSTP00000011089	ENSPSTP00000002109	annotation not available	Integral membrane protein 2B.	0.875
ENSPSTP00000011528	ENSPSTP00000011089	ENSPSTP00000011528	ENSPSTP00000011089	annotation not available	annotation not available	0.956
ENSPSTP00000011528	ENSPSTP00000025328	ENSPSTP00000011528	ENSPSTP00000025328	annotation not available	annotation not available	0.956
ENSPSTP00000011528	ITM2B	ENSPSTP00000011528	ENSPSTP00000002109	annotation not available	Integral membrane protein 2B.	0.691
ENSPSTP00000015973	ENSPSTP00000011089	ENSPSTP00000015973	ENSPSTP00000011089	annotation not available	annotation not available	0.580
ENSPSTP00000015973	ENSPSTP00000025328	ENSPSTP00000015973	ENSPSTP00000025328	annotation not available	annotation not available	0.580
ENSPSTP00000015973	ITM2B	ENSPSTP00000015973	ENSPSTP00000002109	annotation not available	Integral membrane protein 2B.	0.919
ENSPSTP00000021023	ENSPSTP00000011089	ENSPSTP00000021023	ENSPSTP00000011089	annotation not available	annotation not available	0.956
ENSPSTP00000021023	ENSPSTP00000025328	ENSPSTP00000021023	ENSPSTP00000025328	annotation not available	annotation not available	0.956
ENSPSTP00000021023	ITM2B	ENSPSTP00000021023	ENSPSTP00000002109	annotation not available	Integral membrane protein 2B.	0.691
ENSPSTP00000025328	ENSPSTP00000011089	ENSPSTP00000025328	ENSPSTP00000011089	annotation not available	annotation not available	0.922
ENSPSTP00000025328	ENSPSTP00000011528	ENSPSTP00000025328	ENSPSTP00000011528	annotation not available	annotation not available	0.956