OPTC protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

OPTC

Opticin. (332 aa)

Predicted Functional Partners:

MMP13

0.958

ENSPSTP00000017522

0.863

ENSPSTP00000000447

0.836

ENSPSTP00000004640

0.817

ENSPSTP00000003737

0.742

ENSPSTP00000017249

0.742

RAE1

0.698

R3HDML

0.682

ENSPSTP00000016534

0.650

ENSPSTP00000016542

0.650

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

Export your current network:

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same PNG format, but at higher resolution

... as a vector graphic:

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SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

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TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

... network coordinates:

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPSTP00000000447	ENSPSTP00000004640	ENSPSTP00000000447	ENSPSTP00000004640	annotation not available	annotation not available	0.849
ENSPSTP00000000447	ENSPSTP00000016534	ENSPSTP00000000447	ENSPSTP00000016534	annotation not available	annotation not available	0.619
ENSPSTP00000000447	ENSPSTP00000016542	ENSPSTP00000000447	ENSPSTP00000016542	annotation not available	annotation not available	0.619
ENSPSTP00000000447	OPTC	ENSPSTP00000000447	ENSPSTP00000005889	annotation not available	Opticin.	0.836
ENSPSTP00000003737	ENSPSTP00000017522	ENSPSTP00000003737	ENSPSTP00000017522	annotation not available	annotation not available	0.747
ENSPSTP00000003737	MMP13	ENSPSTP00000003737	ENSPSTP00000017230	annotation not available	Matrix metallopeptidase 13.	0.877
ENSPSTP00000003737	OPTC	ENSPSTP00000003737	ENSPSTP00000005889	annotation not available	Opticin.	0.742
ENSPSTP00000004640	ENSPSTP00000000447	ENSPSTP00000004640	ENSPSTP00000000447	annotation not available	annotation not available	0.849
ENSPSTP00000004640	OPTC	ENSPSTP00000004640	ENSPSTP00000005889	annotation not available	Opticin.	0.817
ENSPSTP00000016534	ENSPSTP00000000447	ENSPSTP00000016534	ENSPSTP00000000447	annotation not available	annotation not available	0.619
ENSPSTP00000016534	ENSPSTP00000016542	ENSPSTP00000016534	ENSPSTP00000016542	annotation not available	annotation not available	0.850
ENSPSTP00000016534	OPTC	ENSPSTP00000016534	ENSPSTP00000005889	annotation not available	Opticin.	0.650
ENSPSTP00000016542	ENSPSTP00000000447	ENSPSTP00000016542	ENSPSTP00000000447	annotation not available	annotation not available	0.619
ENSPSTP00000016542	ENSPSTP00000016534	ENSPSTP00000016542	ENSPSTP00000016534	annotation not available	annotation not available	0.850
ENSPSTP00000016542	OPTC	ENSPSTP00000016542	ENSPSTP00000005889	annotation not available	Opticin.	0.650
ENSPSTP00000017249	ENSPSTP00000017522	ENSPSTP00000017249	ENSPSTP00000017522	annotation not available	annotation not available	0.747
ENSPSTP00000017249	MMP13	ENSPSTP00000017249	ENSPSTP00000017230	annotation not available	Matrix metallopeptidase 13.	0.877
ENSPSTP00000017249	OPTC	ENSPSTP00000017249	ENSPSTP00000005889	annotation not available	Opticin.	0.742
ENSPSTP00000017522	ENSPSTP00000003737	ENSPSTP00000017522	ENSPSTP00000003737	annotation not available	annotation not available	0.747
ENSPSTP00000017522	ENSPSTP00000017249	ENSPSTP00000017522	ENSPSTP00000017249	annotation not available	annotation not available	0.747