URB2 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

URB2

URB2 ribosome biogenesis homolog. (1541 aa)

Predicted Functional Partners:

CS

0.952

ENSPSTP00000003800

0.951

ENSPSTP00000016099

0.951

H6PD

0.943

IDH1

0.883

SUCLG1

0.875

ENSPSTP00000025331

0.867

PKM

0.855

ENSPSTP00000023851

0.855

CYB5R4

0.849

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CS	CYB5R4	ENSPSTP00000018893	ENSPSTP00000013458	Citrate synthase.	Cytochrome b5 reductase 4.	0.649
CS	ENSPSTP00000023851	ENSPSTP00000018893	ENSPSTP00000023851	Citrate synthase.	annotation not available	0.557
CS	ENSPSTP00000025331	ENSPSTP00000018893	ENSPSTP00000025331	Citrate synthase.	annotation not available	0.994
CS	H6PD	ENSPSTP00000018893	ENSPSTP00000005655	Citrate synthase.	Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.	0.697
CS	IDH1	ENSPSTP00000018893	ENSPSTP00000004214	Citrate synthase.	Isocitrate dehydrogenase (NADP(+)) 1.	0.999
CS	PKM	ENSPSTP00000018893	ENSPSTP00000001589	Citrate synthase.	Pyruvate kinase M1/2.	0.557
CS	SUCLG1	ENSPSTP00000018893	ENSPSTP00000018152	Citrate synthase.	succinate-CoA ligase alpha subunit.	0.993
CS	URB2	ENSPSTP00000018893	ENSPSTP00000006589	Citrate synthase.	URB2 ribosome biogenesis homolog.	0.952
CYB5R4	CS	ENSPSTP00000013458	ENSPSTP00000018893	Cytochrome b5 reductase 4.	Citrate synthase.	0.649
CYB5R4	ENSPSTP00000023851	ENSPSTP00000013458	ENSPSTP00000023851	Cytochrome b5 reductase 4.	annotation not available	0.443
CYB5R4	ENSPSTP00000025331	ENSPSTP00000013458	ENSPSTP00000025331	Cytochrome b5 reductase 4.	annotation not available	0.787
CYB5R4	H6PD	ENSPSTP00000013458	ENSPSTP00000005655	Cytochrome b5 reductase 4.	Hexose-6-phosphate dehydrogenase/glucose 1-dehydrogenase.	0.514
CYB5R4	IDH1	ENSPSTP00000013458	ENSPSTP00000004214	Cytochrome b5 reductase 4.	Isocitrate dehydrogenase (NADP(+)) 1.	0.763
CYB5R4	PKM	ENSPSTP00000013458	ENSPSTP00000001589	Cytochrome b5 reductase 4.	Pyruvate kinase M1/2.	0.443
CYB5R4	URB2	ENSPSTP00000013458	ENSPSTP00000006589	Cytochrome b5 reductase 4.	URB2 ribosome biogenesis homolog.	0.849
ENSPSTP00000003800	URB2	ENSPSTP00000003800	ENSPSTP00000006589	annotation not available	URB2 ribosome biogenesis homolog.	0.951
ENSPSTP00000016099	URB2	ENSPSTP00000016099	ENSPSTP00000006589	annotation not available	URB2 ribosome biogenesis homolog.	0.951
ENSPSTP00000023851	CS	ENSPSTP00000023851	ENSPSTP00000018893	annotation not available	Citrate synthase.	0.557
ENSPSTP00000023851	CYB5R4	ENSPSTP00000023851	ENSPSTP00000013458	annotation not available	Cytochrome b5 reductase 4.	0.443
ENSPSTP00000023851	ENSPSTP00000025331	ENSPSTP00000023851	ENSPSTP00000025331	annotation not available	annotation not available	0.522