SNRPD1 protein (Pavo cristatus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

white nodes:
second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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experimentally determined

co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

SNRPD1

Small nuclear ribonucleoprotein D1 polypeptide. (119 aa)

Predicted Functional Partners:

SNRPB

0.999

ENSPSTP00000002991

0.999

SNRPD3

0.999

SNRPG

0.999

ENSPSTP00000015771

0.998

ENSPSTP00000023570

0.998

SNRPA1

0.997

SF3A2

0.996

LSM3

0.996

CLNS1A

0.994

Your Current Organism:

Pavo cristatus

NCBI taxonomy Id: 9049
Other names: Indian peafowl, P. cristatus, blue peafowl

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CLNS1A	ENSPSTP00000002991	ENSPSTP00000008619	ENSPSTP00000002991	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.992
CLNS1A	ENSPSTP00000015771	ENSPSTP00000008619	ENSPSTP00000015771	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.978
CLNS1A	ENSPSTP00000023570	ENSPSTP00000008619	ENSPSTP00000023570	Chloride nucleotide-sensitive channel 1A.	annotation not available	0.955
CLNS1A	LSM3	ENSPSTP00000008619	ENSPSTP00000025521	Chloride nucleotide-sensitive channel 1A.	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.984
CLNS1A	SNRPB	ENSPSTP00000008619	ENSPSTP00000001229	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptides B and B1.	0.985
CLNS1A	SNRPD1	ENSPSTP00000008619	ENSPSTP00000007724	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D1 polypeptide.	0.994
CLNS1A	SNRPD3	ENSPSTP00000008619	ENSPSTP00000003761	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein D3 polypeptide.	0.991
CLNS1A	SNRPG	ENSPSTP00000008619	ENSPSTP00000007864	Chloride nucleotide-sensitive channel 1A.	Small nuclear ribonucleoprotein polypeptide G.	0.963
ENSPSTP00000002991	CLNS1A	ENSPSTP00000002991	ENSPSTP00000008619	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.992
ENSPSTP00000002991	ENSPSTP00000015771	ENSPSTP00000002991	ENSPSTP00000015771	annotation not available	annotation not available	0.999
ENSPSTP00000002991	ENSPSTP00000023570	ENSPSTP00000002991	ENSPSTP00000023570	annotation not available	annotation not available	0.999
ENSPSTP00000002991	LSM3	ENSPSTP00000002991	ENSPSTP00000025521	annotation not available	LSM3 homolog, U6 small nuclear RNA and mRNA degradation associated.	0.999
ENSPSTP00000002991	SF3A2	ENSPSTP00000002991	ENSPSTP00000013757	annotation not available	Splicing factor 3a subunit 2.	0.996
ENSPSTP00000002991	SNRPA1	ENSPSTP00000002991	ENSPSTP00000023603	annotation not available	Small nuclear ribonucleoprotein polypeptide A.	0.995
ENSPSTP00000002991	SNRPB	ENSPSTP00000002991	ENSPSTP00000001229	annotation not available	Small nuclear ribonucleoprotein polypeptides B and B1.	0.999
ENSPSTP00000002991	SNRPD1	ENSPSTP00000002991	ENSPSTP00000007724	annotation not available	Small nuclear ribonucleoprotein D1 polypeptide.	0.999
ENSPSTP00000002991	SNRPD3	ENSPSTP00000002991	ENSPSTP00000003761	annotation not available	Small nuclear ribonucleoprotein D3 polypeptide.	0.999
ENSPSTP00000002991	SNRPG	ENSPSTP00000002991	ENSPSTP00000007864	annotation not available	Small nuclear ribonucleoprotein polypeptide G.	0.999
ENSPSTP00000015771	CLNS1A	ENSPSTP00000015771	ENSPSTP00000008619	annotation not available	Chloride nucleotide-sensitive channel 1A.	0.978
ENSPSTP00000015771	ENSPSTP00000002991	ENSPSTP00000015771	ENSPSTP00000002991	annotation not available	annotation not available	0.999