STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
spoIIID14 kDa transcription factor. (98 aa)    
Predicted Functional Partners:
spoIIIAE
Stage III sporulation protein AE precursor.
  
    0.921
spoVT_2
Stage V sporulation protein T.
  
  
 0.913
spoIIAB_2
Anti-sigma F factor.
  
   
 0.902
spoIVA
Stage IV sporulation protein A.
  
  
 0.894
SCJ60224.1
Stage II sporulation protein R.
  
   
 0.876
SCJ47767.1
Stage III sporulation protein AC.
  
  
 0.874
SCJ47819.1
Uncharacterized protein conserved in bacteria.
  
   
 0.871
spoIIE
Stage II sporulation protein E.
  
   
 0.857
SCJ80318.1
Stage II sporulation protein P.
  
  
 0.855
SCJ47661.1
Stage III sporulation protein AG.
  
  
 0.844
Your Current Organism:
uncultured Anaerotruncus sp.
NCBI taxonomy Id: 905011
Other names: u. Anaerotruncus sp.
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.