L1IAL8_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1IAL8_GUITC

Uncharacterized protein. (147 aa)

Predicted Functional Partners:

L1JRH5_GUITC

0.951

L1JND3_GUITC

0.927

L1IS88_GUITC

0.921

L1JUL1_GUITC

0.921

L1JYV0_GUITC

0.921

L1K422_GUITC

0.921

L1JF52_GUITC

0.900

L1JW84_GUITC

0.884

L1JJ42_GUITC

0.868

L1JH22_GUITC

0.855

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1IAL8_GUITC	L1IS88_GUITC	L1IAL8	L1IS88	Uncharacterized protein.	RNA polymerase II subunit 9, RPB9.	0.921
L1IAL8_GUITC	L1JF52_GUITC	L1IAL8	L1JF52	Uncharacterized protein.	Spt4 domain-containing protein.	0.900
L1IAL8_GUITC	L1JH22_GUITC	L1IAL8	L1JH22	Uncharacterized protein.	Uncharacterized protein.	0.855
L1IAL8_GUITC	L1JJ42_GUITC	L1IAL8	L1JJ42	Uncharacterized protein.	HTH TFE/IIEalpha-type domain-containing protein.	0.868
L1IAL8_GUITC	L1JND3_GUITC	L1IAL8	L1JND3	Uncharacterized protein.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.927
L1IAL8_GUITC	L1JRH5_GUITC	L1IAL8	L1JRH5	Uncharacterized protein.	Uncharacterized protein.	0.951
L1IAL8_GUITC	L1JUL1_GUITC	L1IAL8	L1JUL1	Uncharacterized protein.	DNA-directed RNA polymerase II subunit, RPB4.	0.921
L1IAL8_GUITC	L1JW84_GUITC	L1IAL8	L1JW84	Uncharacterized protein.	Uncharacterized protein.	0.884
L1IAL8_GUITC	L1JYV0_GUITC	L1IAL8	L1JYV0	Uncharacterized protein.	RPOLD domain-containing protein.	0.921
L1IAL8_GUITC	L1K422_GUITC	L1IAL8	L1K422	Uncharacterized protein.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.921
L1IS88_GUITC	L1IAL8_GUITC	L1IS88	L1IAL8	RNA polymerase II subunit 9, RPB9.	Uncharacterized protein.	0.921
L1IS88_GUITC	L1JF52_GUITC	L1IS88	L1JF52	RNA polymerase II subunit 9, RPB9.	Spt4 domain-containing protein.	0.999
L1IS88_GUITC	L1JH22_GUITC	L1IS88	L1JH22	RNA polymerase II subunit 9, RPB9.	Uncharacterized protein.	0.989
L1IS88_GUITC	L1JJ42_GUITC	L1IS88	L1JJ42	RNA polymerase II subunit 9, RPB9.	HTH TFE/IIEalpha-type domain-containing protein.	0.993
L1IS88_GUITC	L1JND3_GUITC	L1IS88	L1JND3	RNA polymerase II subunit 9, RPB9.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.999
L1IS88_GUITC	L1JRH5_GUITC	L1IS88	L1JRH5	RNA polymerase II subunit 9, RPB9.	Uncharacterized protein.	0.996
L1IS88_GUITC	L1JUL1_GUITC	L1IS88	L1JUL1	RNA polymerase II subunit 9, RPB9.	DNA-directed RNA polymerase II subunit, RPB4.	0.999
L1IS88_GUITC	L1JW84_GUITC	L1IS88	L1JW84	RNA polymerase II subunit 9, RPB9.	Uncharacterized protein.	0.894
L1IS88_GUITC	L1JYV0_GUITC	L1IS88	L1JYV0	RNA polymerase II subunit 9, RPB9.	RPOLD domain-containing protein.	0.999
L1IS88_GUITC	L1K422_GUITC	L1IS88	L1K422	RNA polymerase II subunit 9, RPB9.	DNA-directed RNA polymerases I, II, and III subunit RPABC3; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Common component of RNA polymerases I, II and III which synthesize ribosomal RNA precursors, mRNA precursors and many functional non- coding RNAs, and small RNAs, such as 5S rRNA and tRNAs, respectively.	0.999