L1IBR2_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1IBR2_GUITC

WD_REPEATS_REGION domain-containing protein. (475 aa)

Predicted Functional Partners:

L1JMM5_GUITC

0.723

Smc3

0.499

L1ICU3_GUITC

0.466

L1I5M6_GUITC

0.440

L1JX63_GUITC

0.417

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1I5M6_GUITC	L1IBR2_GUITC	L1I5M6	L1IBR2	SERPIN domain-containing protein; Belongs to the serpin family.	WD_REPEATS_REGION domain-containing protein.	0.440
L1IBR2_GUITC	L1I5M6_GUITC	L1IBR2	L1I5M6	WD_REPEATS_REGION domain-containing protein.	SERPIN domain-containing protein; Belongs to the serpin family.	0.440
L1IBR2_GUITC	L1ICU3_GUITC	L1IBR2	L1ICU3	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.466
L1IBR2_GUITC	L1JMM5_GUITC	L1IBR2	L1JMM5	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.723
L1IBR2_GUITC	L1JX63_GUITC	L1IBR2	L1JX63	WD_REPEATS_REGION domain-containing protein.	PHD-type domain-containing protein.	0.417
L1IBR2_GUITC	Smc3	L1IBR2	L1J9N8	WD_REPEATS_REGION domain-containing protein.	Sister chromatid cohesin complex subunit, structural maintenance of chromosome protein 3, SMC3.	0.499
L1ICU3_GUITC	L1IBR2_GUITC	L1ICU3	L1IBR2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.466
L1JMM5_GUITC	L1IBR2_GUITC	L1JMM5	L1IBR2	Uncharacterized protein.	WD_REPEATS_REGION domain-containing protein.	0.723
L1JX63_GUITC	L1IBR2_GUITC	L1JX63	L1IBR2	PHD-type domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.417
Smc3	L1IBR2_GUITC	L1J9N8	L1IBR2	Sister chromatid cohesin complex subunit, structural maintenance of chromosome protein 3, SMC3.	WD_REPEATS_REGION domain-containing protein.	0.499