L1IDN1_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1IDN1_GUITC

Hflx-type G domain-containing protein. (473 aa)

Predicted Functional Partners:

L1I583_GUITC

0.984

L1IPF9_GUITC

0.984

L1IPU2_GUITC

0.981

L1J232_GUITC

0.981

L1K0T7_GUITC

0.981

RPL17e

0.980

L1JNS8_GUITC

0.975

RPL26e

0.972

RPL11e

0.965

L1I932_GUITC

0.955

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1I583_GUITC	L1I932_GUITC	L1I583	L1I932	Uncharacterized protein.	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	0.999
L1I583_GUITC	L1IDN1_GUITC	L1I583	L1IDN1	Uncharacterized protein.	Hflx-type G domain-containing protein.	0.984
L1I583_GUITC	L1IPF9_GUITC	L1I583	L1IPF9	Uncharacterized protein.	Uncharacterized protein.	0.999
L1I583_GUITC	L1IPU2_GUITC	L1I583	L1IPU2	Uncharacterized protein.	Uncharacterized protein.	0.999
L1I583_GUITC	L1J232_GUITC	L1I583	L1J232	Uncharacterized protein.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
L1I583_GUITC	L1JNS8_GUITC	L1I583	L1JNS8	Uncharacterized protein.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
L1I583_GUITC	L1K0T7_GUITC	L1I583	L1K0T7	Uncharacterized protein.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
L1I583_GUITC	RPL11e	L1I583	L1JG94	Uncharacterized protein.	Large subunit ribosomal protein L11e, cytoplasmic; Belongs to the universal ribosomal protein uL5 family.	0.999
L1I583_GUITC	RPL17e	L1I583	L1J568	Uncharacterized protein.	Large subunit ribosomal protein L17e, cytoplasmic; Belongs to the universal ribosomal protein uL22 family.	0.999
L1I583_GUITC	RPL26e	L1I583	L1I4Y1	Uncharacterized protein.	Large subunit ribosomal protein L26e, cytoplasmic.	0.999
L1I932_GUITC	L1I583_GUITC	L1I932	L1I583	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
L1I932_GUITC	L1IDN1_GUITC	L1I932	L1IDN1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Hflx-type G domain-containing protein.	0.955
L1I932_GUITC	L1IPF9_GUITC	L1I932	L1IPF9	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
L1I932_GUITC	L1IPU2_GUITC	L1I932	L1IPU2	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein.	0.999
L1I932_GUITC	L1J232_GUITC	L1I932	L1J232	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Uncharacterized protein; Belongs to the bacterial ribosomal protein bL17 family.	0.999
L1I932_GUITC	L1JNS8_GUITC	L1I932	L1JNS8	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Ribosomal protein; Belongs to the bacterial ribosomal protein bL36 family.	0.999
L1I932_GUITC	L1K0T7_GUITC	L1I932	L1K0T7	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	50S ribosomal protein L20; Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit.	0.999
L1I932_GUITC	RPL11e	L1I932	L1JG94	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Large subunit ribosomal protein L11e, cytoplasmic; Belongs to the universal ribosomal protein uL5 family.	0.996
L1I932_GUITC	RPL17e	L1I932	L1J568	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Large subunit ribosomal protein L17e, cytoplasmic; Belongs to the universal ribosomal protein uL22 family.	0.997
L1I932_GUITC	RPL26e	L1I932	L1I4Y1	Uncharacterized protein; Belongs to the universal ribosomal protein uL11 family.	Large subunit ribosomal protein L26e, cytoplasmic.	0.997