L1IF21_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1IF21_GUITC

UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family. (165 aa)

Predicted Functional Partners:

L1J8D1_GUITC

0.999

L1JW20_GUITC

0.999

L1JGF0_GUITC

0.998

L1IL99_GUITC

0.997

NUP50

0.997

L1JGP4_GUITC

0.995

L1IVE1_GUITC

0.994

PCNA

0.993

L1JTP1_GUITC

0.986

L1JKX9_GUITC

0.969

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1IF21_GUITC	L1IL99_GUITC	L1IF21	L1IL99	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	RanBD1 domain-containing protein.	0.997
L1IF21_GUITC	L1IVE1_GUITC	L1IF21	L1IVE1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	BTB domain-containing protein.	0.994
L1IF21_GUITC	L1J8D1_GUITC	L1IF21	L1J8D1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Ubiquitin-like domain-containing protein.	0.999
L1IF21_GUITC	L1JGF0_GUITC	L1IF21	L1JGF0	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	SP-RING-type domain-containing protein.	0.998
L1IF21_GUITC	L1JGP4_GUITC	L1IF21	L1JGP4	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	ThiF domain-containing protein.	0.995
L1IF21_GUITC	L1JKX9_GUITC	L1IF21	L1JKX9	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	HTH OST-type domain-containing protein.	0.969
L1IF21_GUITC	L1JTP1_GUITC	L1IF21	L1JTP1	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.986
L1IF21_GUITC	L1JW20_GUITC	L1IF21	L1JW20	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Uncharacterized protein.	0.999
L1IF21_GUITC	NUP50	L1IF21	L1JYX2	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Nup50, nuclear pore complex component.	0.997
L1IF21_GUITC	PCNA	L1IF21	L1IQM8	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.993
L1IL99_GUITC	L1IF21_GUITC	L1IL99	L1IF21	RanBD1 domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.997
L1IL99_GUITC	L1J8D1_GUITC	L1IL99	L1J8D1	RanBD1 domain-containing protein.	Ubiquitin-like domain-containing protein.	0.999
L1IL99_GUITC	L1JGF0_GUITC	L1IL99	L1JGF0	RanBD1 domain-containing protein.	SP-RING-type domain-containing protein.	0.461
L1IL99_GUITC	L1JGP4_GUITC	L1IL99	L1JGP4	RanBD1 domain-containing protein.	ThiF domain-containing protein.	0.599
L1IL99_GUITC	L1JKX9_GUITC	L1IL99	L1JKX9	RanBD1 domain-containing protein.	HTH OST-type domain-containing protein.	0.999
L1IL99_GUITC	L1JW20_GUITC	L1IL99	L1JW20	RanBD1 domain-containing protein.	Uncharacterized protein.	0.619
L1IL99_GUITC	NUP50	L1IL99	L1JYX2	RanBD1 domain-containing protein.	Nup50, nuclear pore complex component.	0.504
L1IVE1_GUITC	L1IF21_GUITC	L1IVE1	L1IF21	BTB domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.994
L1IVE1_GUITC	L1J8D1_GUITC	L1IVE1	L1J8D1	BTB domain-containing protein.	Ubiquitin-like domain-containing protein.	0.515
L1J8D1_GUITC	L1IF21_GUITC	L1J8D1	L1IF21	Ubiquitin-like domain-containing protein.	UBIQUITIN_CONJUGAT_2 domain-containing protein; Belongs to the ubiquitin-conjugating enzyme family.	0.999