L1JUD2_GUITC protein (Guillardia theta) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

L1JUD2_GUITC

Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family. (616 aa)

Predicted Functional Partners:

L1J466_GUITC

0.907

L1JX44_GUITC

0.900

LSM1

0.810

L1JDB0_GUITC

0.809

L1J5W1_GUITC

0.804

L1IDS6_GUITC

0.799

L1J664_GUITC

0.788

L1JVZ5_GUITC

0.788

L1IJA4_GUITC

0.783

L1I7C3_GUITC

0.768

Your Current Organism:

Guillardia theta

NCBI taxonomy Id: 905079
Other names: G. theta CCMP2712, Guillardia theta CCMP2712

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
L1I7C3_GUITC	L1J466_GUITC	L1I7C3	L1J466	LsmAD domain-containing protein.	Uncharacterized protein.	0.768
L1I7C3_GUITC	L1J5W1_GUITC	L1I7C3	L1J5W1	LsmAD domain-containing protein.	Nuclear cap-binding protein subunit 2.	0.535
L1I7C3_GUITC	L1J664_GUITC	L1I7C3	L1J664	LsmAD domain-containing protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.417
L1I7C3_GUITC	L1JUD2_GUITC	L1I7C3	L1JUD2	LsmAD domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.768
L1I7C3_GUITC	L1JVZ5_GUITC	L1I7C3	L1JVZ5	LsmAD domain-containing protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.417
L1I7C3_GUITC	L1JX44_GUITC	L1I7C3	L1JX44	LsmAD domain-containing protein.	Uncharacterized protein.	0.768
L1IDS6_GUITC	L1J466_GUITC	L1IDS6	L1J466	Exonuclease domain-containing protein.	Uncharacterized protein.	0.799
L1IDS6_GUITC	L1J664_GUITC	L1IDS6	L1J664	Exonuclease domain-containing protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.550
L1IDS6_GUITC	L1JDB0_GUITC	L1IDS6	L1JDB0	Exonuclease domain-containing protein.	Pan3_PK domain-containing protein.	0.999
L1IDS6_GUITC	L1JUD2_GUITC	L1IDS6	L1JUD2	Exonuclease domain-containing protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.799
L1IDS6_GUITC	L1JVZ5_GUITC	L1IDS6	L1JVZ5	Exonuclease domain-containing protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.550
L1IDS6_GUITC	L1JX44_GUITC	L1IDS6	L1JX44	Exonuclease domain-containing protein.	Uncharacterized protein.	0.799
L1IDS6_GUITC	LSM1	L1IDS6	L1JFH7	Exonuclease domain-containing protein.	U6 snRNA-associated Sm-like protein LSm1; Probably involved with other LSm subunits in the general process of degradation of mRNAs.	0.464
L1IJA4_GUITC	L1J466_GUITC	L1IJA4	L1J466	Uncharacterized protein.	Uncharacterized protein.	0.783
L1IJA4_GUITC	L1J5W1_GUITC	L1IJA4	L1J5W1	Uncharacterized protein.	Nuclear cap-binding protein subunit 2.	0.999
L1IJA4_GUITC	L1J664_GUITC	L1IJA4	L1J664	Uncharacterized protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.788
L1IJA4_GUITC	L1JUD2_GUITC	L1IJA4	L1JUD2	Uncharacterized protein.	Polyadenylate-binding protein; Binds the poly(A) tail of mRNA. Belongs to the polyadenylate-binding protein type-1 family.	0.783
L1IJA4_GUITC	L1JVZ5_GUITC	L1IJA4	L1JVZ5	Uncharacterized protein.	Translation initiation factor 4F, cap-binding subunit; Belongs to the eukaryotic initiation factor 4E family.	0.788
L1IJA4_GUITC	L1JX44_GUITC	L1IJA4	L1JX44	Uncharacterized protein.	Uncharacterized protein.	0.783
L1J466_GUITC	L1I7C3_GUITC	L1J466	L1I7C3	Uncharacterized protein.	LsmAD domain-containing protein.	0.768