Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3DSemaphorin 3D. (761 aa)    
Predicted Functional Partners:
SEMA3C
Semaphorin 3C.
    
   0.717
PLXND1
Plexin D1.
    
 0.676
METTL4
Methyltransferase like 4.
      
 0.611
NRP1
Neuropilin 1.
    
 0.608
TFEC
Transcription factor EC.
      
 0.606
PLXNA4
Plexin A4.
    
 0.595
TBX18
T-box transcription factor 18.
      
 0.581
ENSPCLP00000000808
annotation not available
    
 0.573
TCF21
Transcription factor 21.
      
 0.559
GATAD2A
GATA zinc finger domain containing 2A.
      
 0.554
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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