Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SEMA3ASemaphorin 3A. (778 aa)    
Predicted Functional Partners:
NRP1
Neuropilin 1.
    
 0.976
ENSPCLP00000000808
annotation not available
    
 0.847
PLXND1
Plexin D1.
    
 0.824
PLXNA4
Plexin A4.
    
 0.821
PLXNA2
Plexin A2.
    
 0.820
PLXNC1
Plexin C1.
    
 0.792
PLXNB1
Plexin B1.
    
 0.669
PLXNB2
Plexin B2.
    
 0.636
NRP2
Neuropilin 2.
    
 
 0.630
SALL4
Spalt like transcription factor 4.
      
 0.569
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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