Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
PIM3Pim-3 proto-oncogene, serine/threonine kinase. (323 aa)    
Predicted Functional Partners:
SCRIB
Scribble planar cell polarity protein.
    
 
 0.926
EFNB1
Ephrin B1.
   
  
 0.847
BICC1
BicC family RNA binding protein 1.
      
 0.842
PUF60
poly(U) binding splicing factor 60.
      
 0.838
TRIM71
Tripartite motif containing 71.
    
 
 0.732
ENSPCLP00000001568
annotation not available
      
 0.652
LRRC1
Leucine rich repeat containing 1.
    
 
 0.634
NAP1L1
Nucleosome assembly protein 1 like 1.
    
 
 0.633
PDZD2
PDZ domain containing 2.
      
 0.631
COPS7B
COP9 signalosome subunit 7B.
      
 0.622
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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