Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRRN3Leucine rich repeat neuronal 3. (708 aa)    
Predicted Functional Partners:
ENSPCLP00000011373
annotation not available
      
 0.555
LIMA1
LIM domain and actin binding 1.
      
 0.546
F2RL3
F2R like thrombin or trypsin receptor 3.
    
 
 0.534
VPS26A
VPS26, retromer complex component A.
      
 0.495
PTPRO
Protein tyrosine phosphatase receptor type O.
    
 0.489
ALG6
ALG6 alpha-1,3-glucosyltransferase.
      
 0.476
VSTM5
V-set and transmembrane domain containing 5.
      
 0.474
DOCK4
Dedicator of cytokinesis 4.
    
 0.455
ENSPCLP00000001133
annotation not available
      
 0.450
IMMP2L
Inner mitochondrial membrane peptidase subunit 2.
      
 0.450
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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