Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCLP00000001139annotation not available (1009 aa)    
Predicted Functional Partners:
UPF1
UPF1 RNA helicase and ATPase.
   
 
 0.826
RBM45
RNA binding motif protein 45.
    
   0.699
HNRNPR
Heterogeneous nuclear ribonucleoprotein R.
    
   0.688
SYNCRIP
Synaptotagmin binding cytoplasmic RNA interacting protein.
    
   0.688
TTLL2
Tubulin tyrosine ligase like 2.
      
 0.652
YBX1
Y-box binding protein 1.
    
 
 0.617
STAU1
Staufen double-stranded RNA binding protein 1.
    
 
 0.614
RC3H2
Ring finger and CCCH-type domains 2.
    
   0.590
RNF144B
Ring finger protein 144B.
      
 0.569
SMYD4
SET and MYND domain containing 4.
      
 0.568
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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