RBM33 protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

RBM33

RNA binding motif protein 33. (1193 aa)

Predicted Functional Partners:

THOC7

0.805

THOC1

0.773

RBM26

0.741

NCBP3

0.717

ENSPCLP00000010043

0.712

LHFPL2

0.711

FAM83C

0.694

PCF11

0.672

ENSPCLP00000009422

0.659

NOM1

0.652

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSPCLP00000009422	RBM33	ENSPCLP00000009422	ENSPCLP00000001152	annotation not available	RNA binding motif protein 33.	0.659
ENSPCLP00000010043	LHFPL2	ENSPCLP00000010043	ENSPCLP00000017122	annotation not available	LHFPL tetraspan subfamily member 2.	0.557
ENSPCLP00000010043	RBM33	ENSPCLP00000010043	ENSPCLP00000001152	annotation not available	RNA binding motif protein 33.	0.712
FAM83C	RBM33	ENSPCLP00000022069	ENSPCLP00000001152	Family with sequence similarity 83 member C.	RNA binding motif protein 33.	0.694
LHFPL2	ENSPCLP00000010043	ENSPCLP00000017122	ENSPCLP00000010043	LHFPL tetraspan subfamily member 2.	annotation not available	0.557
LHFPL2	RBM33	ENSPCLP00000017122	ENSPCLP00000001152	LHFPL tetraspan subfamily member 2.	RNA binding motif protein 33.	0.711
NCBP3	NOM1	ENSPCLP00000004211	ENSPCLP00000001158	Nuclear cap binding subunit 3.	Nucleolar protein with MIF4G domain 1.	0.600
NCBP3	RBM33	ENSPCLP00000004211	ENSPCLP00000001152	Nuclear cap binding subunit 3.	RNA binding motif protein 33.	0.717
NCBP3	THOC1	ENSPCLP00000004211	ENSPCLP00000024547	Nuclear cap binding subunit 3.	THO complex 1.	0.963
NCBP3	THOC7	ENSPCLP00000004211	ENSPCLP00000000698	Nuclear cap binding subunit 3.	THO complex 7.	0.952
NOM1	NCBP3	ENSPCLP00000001158	ENSPCLP00000004211	Nucleolar protein with MIF4G domain 1.	Nuclear cap binding subunit 3.	0.600
NOM1	RBM33	ENSPCLP00000001158	ENSPCLP00000001152	Nucleolar protein with MIF4G domain 1.	RNA binding motif protein 33.	0.652
PCF11	RBM26	ENSPCLP00000023188	ENSPCLP00000000238	PCF11 cleavage and polyadenylation factor subunit.	RNA binding motif protein 26.	0.709
PCF11	RBM33	ENSPCLP00000023188	ENSPCLP00000001152	PCF11 cleavage and polyadenylation factor subunit.	RNA binding motif protein 33.	0.672
PCF11	THOC1	ENSPCLP00000023188	ENSPCLP00000024547	PCF11 cleavage and polyadenylation factor subunit.	THO complex 1.	0.751
PCF11	THOC7	ENSPCLP00000023188	ENSPCLP00000000698	PCF11 cleavage and polyadenylation factor subunit.	THO complex 7.	0.826
RBM26	PCF11	ENSPCLP00000000238	ENSPCLP00000023188	RNA binding motif protein 26.	PCF11 cleavage and polyadenylation factor subunit.	0.709
RBM26	RBM33	ENSPCLP00000000238	ENSPCLP00000001152	RNA binding motif protein 26.	RNA binding motif protein 33.	0.741
RBM33	ENSPCLP00000009422	ENSPCLP00000001152	ENSPCLP00000009422	RNA binding motif protein 33.	annotation not available	0.659
RBM33	ENSPCLP00000010043	ENSPCLP00000001152	ENSPCLP00000010043	RNA binding motif protein 33.	annotation not available	0.712