Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LMBR1Limb development membrane protein 1. (508 aa)    
Predicted Functional Partners:
EPRS1
glutamyl-prolyl-tRNA synthetase 1.
    
 
 0.648
WNT8B
Wnt family member 8B.
      
 0.557
CIB3
Calcium and integrin binding family member 3.
      
 0.520
LUM
Lumican.
      
 0.514
CACNG2
Calcium voltage-gated channel auxiliary subunit gamma 2.
      
 0.505
SIGMAR1
Sigma non-opioid intracellular receptor 1.
    
 
 0.478
FKBP10
FKBP prolyl isomerase 10.
    
 
 0.473
SLC35F3
Solute carrier family 35 member F3.
      
 0.470
RNF32
Ring finger protein 32.
    
 
 0.465
ENSPCLP00000017707
annotation not available
    
 
 0.462
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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