Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LARP4BLa ribonucleoprotein 4B. (1834 aa)    
Predicted Functional Partners:
RACK1
Receptor for activated C kinase 1.
    
 
 0.979
LARP4
La ribonucleoprotein 4.
   
 
 0.772
NFX1
Nuclear transcription factor, X-box binding 1.
    
   0.700
LARP1B
La ribonucleoprotein 1B.
   
 
 0.620
G3BP2
G3BP stress granule assembly factor 2.
   
 
 0.600
SARNP
SAP domain containing ribonucleoprotein.
      
 0.581
ATXN2
Ataxin 2.
   
 
 0.570
ZRANB2
Zinc finger RANBP2-type containing 2.
      
 0.563
TMEM60
Transmembrane protein 60.
      
 0.555
ASB8
Ankyrin repeat and SOCS box containing 8.
      
 0.536
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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