Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCLP00000001194annotation not available (281 aa)    
Predicted Functional Partners:
FDPS
Farnesyl diphosphate synthase.
  
 
 0.994
GGPS1
Geranylgeranyl diphosphate synthase 1.
  
 
 0.981
SQLE
Squalene epoxidase.
   
  
 0.975
HMGCS1
3-hydroxy-3-methylglutaryl-CoA synthase 1.
  
  
 0.973
CYP51A1
Cytochrome P450 family 51 subfamily A member 1.
  
  
 0.948
LSS
Lanosterol synthase.
  
 
 0.947
LMO4
LIM domain only 4.
    
   0.913
CH25H
Cholesterol 25-hydroxylase.
  
  
 0.903
MSMO1
Methylsterol monooxygenase 1.
  
  
 0.903
ENSPCLP00000022511
annotation not available
  
 
 0.891
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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