ZEB1 protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Co-expression

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[Homology]

Score

ZEB1

Zinc finger E-box binding homeobox 1. (1113 aa)

Predicted Functional Partners:

EP300

0.964

CTBP1

0.958

CTBP2

0.958

SIRT1

0.939

ENSPCLP00000005815

0.891

CDH1

0.854

ENSPCLP00000012606

0.811

USP22

0.726

USP7

0.724

SMARCA2

0.710

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

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structured XML interaction data, according to the 'PSI-MI' data standard

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
CDH1	EP300	ENSPCLP00000024688	ENSPCLP00000014600	Cadherin 1.	E1A binding protein p300.	0.452
CDH1	ZEB1	ENSPCLP00000024688	ENSPCLP00000001259	Cadherin 1.	Zinc finger E-box binding homeobox 1.	0.854
CTBP1	CTBP2	ENSPCLP00000001724	ENSPCLP00000010485	C-terminal binding protein 1.	C-terminal binding protein 2.	0.900
CTBP1	ENSPCLP00000012606	ENSPCLP00000001724	ENSPCLP00000012606	C-terminal binding protein 1.	annotation not available	0.900
CTBP1	EP300	ENSPCLP00000001724	ENSPCLP00000014600	C-terminal binding protein 1.	E1A binding protein p300.	0.810
CTBP1	ZEB1	ENSPCLP00000001724	ENSPCLP00000001259	C-terminal binding protein 1.	Zinc finger E-box binding homeobox 1.	0.958
CTBP2	CTBP1	ENSPCLP00000010485	ENSPCLP00000001724	C-terminal binding protein 2.	C-terminal binding protein 1.	0.900
CTBP2	ENSPCLP00000012606	ENSPCLP00000010485	ENSPCLP00000012606	C-terminal binding protein 2.	annotation not available	0.901
CTBP2	EP300	ENSPCLP00000010485	ENSPCLP00000014600	C-terminal binding protein 2.	E1A binding protein p300.	0.810
CTBP2	ZEB1	ENSPCLP00000010485	ENSPCLP00000001259	C-terminal binding protein 2.	Zinc finger E-box binding homeobox 1.	0.958
ENSPCLP00000005815	ZEB1	ENSPCLP00000005815	ENSPCLP00000001259	annotation not available	Zinc finger E-box binding homeobox 1.	0.891
ENSPCLP00000012606	CTBP1	ENSPCLP00000012606	ENSPCLP00000001724	annotation not available	C-terminal binding protein 1.	0.900
ENSPCLP00000012606	CTBP2	ENSPCLP00000012606	ENSPCLP00000010485	annotation not available	C-terminal binding protein 2.	0.901
ENSPCLP00000012606	EP300	ENSPCLP00000012606	ENSPCLP00000014600	annotation not available	E1A binding protein p300.	0.772
ENSPCLP00000012606	ZEB1	ENSPCLP00000012606	ENSPCLP00000001259	annotation not available	Zinc finger E-box binding homeobox 1.	0.811
EP300	CDH1	ENSPCLP00000014600	ENSPCLP00000024688	E1A binding protein p300.	Cadherin 1.	0.452
EP300	CTBP1	ENSPCLP00000014600	ENSPCLP00000001724	E1A binding protein p300.	C-terminal binding protein 1.	0.810
EP300	CTBP2	ENSPCLP00000014600	ENSPCLP00000010485	E1A binding protein p300.	C-terminal binding protein 2.	0.810
EP300	ENSPCLP00000012606	ENSPCLP00000014600	ENSPCLP00000012606	E1A binding protein p300.	annotation not available	0.772
EP300	SIRT1	ENSPCLP00000014600	ENSPCLP00000012303	E1A binding protein p300.	Sirtuin 1.	0.974