Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
MAP1LC3CMicrotubule associated protein 1 light chain 3 gamma. (142 aa)    
Predicted Functional Partners:
ATG4B
Autophagy related 4B cysteine peptidase.
   
 0.998
SQSTM1
Sequestosome 1.
   
 0.998
ENSPCLP00000012536
annotation not available
    
 0.998
ATG3
Autophagy related 3.
   
 0.997
ATG7
Autophagy related 7.
   
 0.996
NBR1
NBR1 autophagy cargo receptor.
   
 0.996
ATG4A
Autophagy related 4A cysteine peptidase.
   
 0.991
PLEKHM1
Pleckstrin homology and RUN domain containing M1.
    
 0.989
ULK1
Unc-51 like autophagy activating kinase 1.
   
 0.986
ATG5
Autophagy related 5.
    
 0.979
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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