TFB2M protein (Phasianus colchicus) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

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empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

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Experiments

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[Homology]

Score

TFB2M

Transcription factor B2, mitochondrial. (392 aa)

Predicted Functional Partners:

ENSPCLP00000015741

0.999

POLRMT

0.999

TSR1

0.975

BYSL

0.973

ENSPCLP00000019950

0.943

ENSPCLP00000008512

0.941

ENSPCLP00000002622

0.939

MED8

0.925

CAPN15

0.925

ETV7

0.925

Your Current Organism:

Phasianus colchicus

NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant

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TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

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structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

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node degree of proteins in your network (given the current score cut-off)

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a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BYSL	ENSPCLP00000002622	ENSPCLP00000020529	ENSPCLP00000002622	Bystin like.	annotation not available	0.999
BYSL	ENSPCLP00000008512	ENSPCLP00000020529	ENSPCLP00000008512	Bystin like.	annotation not available	0.993
BYSL	ENSPCLP00000019950	ENSPCLP00000020529	ENSPCLP00000019950	Bystin like.	annotation not available	0.991
BYSL	POLRMT	ENSPCLP00000020529	ENSPCLP00000017946	Bystin like.	RNA polymerase mitochondrial.	0.441
BYSL	TFB2M	ENSPCLP00000020529	ENSPCLP00000001304	Bystin like.	Transcription factor B2, mitochondrial.	0.973
BYSL	TSR1	ENSPCLP00000020529	ENSPCLP00000004090	Bystin like.	TSR1 ribosome maturation factor.	0.999
CAPN15	ETV7	ENSPCLP00000008908	ENSPCLP00000022103	Calpain 15.	ETS variant transcription factor 7.	0.925
CAPN15	MED8	ENSPCLP00000008908	ENSPCLP00000004382	Calpain 15.	Mediator complex subunit 8.	0.924
CAPN15	TFB2M	ENSPCLP00000008908	ENSPCLP00000001304	Calpain 15.	Transcription factor B2, mitochondrial.	0.925
ENSPCLP00000002622	BYSL	ENSPCLP00000002622	ENSPCLP00000020529	annotation not available	Bystin like.	0.999
ENSPCLP00000002622	ENSPCLP00000008512	ENSPCLP00000002622	ENSPCLP00000008512	annotation not available	annotation not available	0.804
ENSPCLP00000002622	ENSPCLP00000019950	ENSPCLP00000002622	ENSPCLP00000019950	annotation not available	annotation not available	0.870
ENSPCLP00000002622	TFB2M	ENSPCLP00000002622	ENSPCLP00000001304	annotation not available	Transcription factor B2, mitochondrial.	0.939
ENSPCLP00000002622	TSR1	ENSPCLP00000002622	ENSPCLP00000004090	annotation not available	TSR1 ribosome maturation factor.	0.999
ENSPCLP00000008512	BYSL	ENSPCLP00000008512	ENSPCLP00000020529	annotation not available	Bystin like.	0.993
ENSPCLP00000008512	ENSPCLP00000002622	ENSPCLP00000008512	ENSPCLP00000002622	annotation not available	annotation not available	0.804
ENSPCLP00000008512	ENSPCLP00000019950	ENSPCLP00000008512	ENSPCLP00000019950	annotation not available	annotation not available	0.988
ENSPCLP00000008512	POLRMT	ENSPCLP00000008512	ENSPCLP00000017946	annotation not available	RNA polymerase mitochondrial.	0.667
ENSPCLP00000008512	TFB2M	ENSPCLP00000008512	ENSPCLP00000001304	annotation not available	Transcription factor B2, mitochondrial.	0.941
ENSPCLP00000008512	TSR1	ENSPCLP00000008512	ENSPCLP00000004090	annotation not available	TSR1 ribosome maturation factor.	0.946