Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AHCTF1AT-hook containing transcription factor 1. (2272 aa)    
Predicted Functional Partners:
NUP133
Nucleoporin 133.
   
 0.998
NUP107
Nucleoporin 107.
    
 0.998
NUP160
Nucleoporin 160.
   
 0.998
NUP37
Nucleoporin 37.
    
 0.994
NUP43
Nucleoporin 43.
    
 0.990
NUP98
Nucleoporin 98.
   
 0.987
NUP85
Nucleoporin 85.
    
 0.984
SEH1L
SEH1 like nucleoporin.
   
 0.982
SEC13
SEC13 homolog, nuclear pore and COPII coat complex component.
    
 0.980
NUP35
Nucleoporin 35.
    
 0.975
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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