Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SMCO4Single-pass membrane protein with coiled-coil domains 4. (59 aa)    
Predicted Functional Partners:
VSTM5
V-set and transmembrane domain containing 5.
      
 0.734
C11orf54
Chromosome 11 open reading frame 54.
      
 0.577
ENSPCLP00000001359
annotation not available
      
 0.577
PDZD11
PDZ domain containing 11.
      
 0.576
NUDT6
Nudix hydrolase 6.
      
 0.493
ENSPCLP00000001353
annotation not available
      
 0.462
GALNT5
Polypeptide N-acetylgalactosaminyltransferase 5.
      
 0.451
HEPHL1
Hephaestin like 1.
      
 0.416
CHAC1
ChaC glutathione specific gamma-glutamylcyclotransferase 1.
      
 0.413
ACOT13
acyl-CoA thioesterase 13.
      
 0.404
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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