Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
GPATCH11G-patch domain containing 11. (252 aa)    
Predicted Functional Partners:
RBM17
RNA binding motif protein 17.
   
 
 0.984
ZRSR2
Zinc finger CCCH-type, RNA binding motif and serine/arginine rich 2.
    
 0.952
SNRPA1
Small nuclear ribonucleoprotein polypeptide A.
   
 
 0.919
SNRPF
Small nuclear ribonucleoprotein polypeptide F.
    
 0.772
SF3A3
Splicing factor 3a subunit 3.
    
 
 0.754
DNAJC8
DnaJ heat shock protein family (Hsp40) member C8.
    
   0.706
PDE12
Phosphodiesterase 12.
    
 0.679
NRDC
Nardilysin convertase.
    
 
 0.659
ENSPCLP00000009974
annotation not available
      
 0.653
U2SURP
U2 snRNP associated SURP domain containing.
    
 
 0.636
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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