Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF4Yip1 domain family member 4. (250 aa)    
Predicted Functional Partners:
YIPF3
Yip1 domain family member 3.
    
 
 0.989
YIPF1
Yip1 domain family member 1.
    
 
 0.902
YIF1B
Yip1 interacting factor homolog B, membrane trafficking protein.
   
 
 0.883
MAEA
Macrophage erythroblast attacher.
   
 
 0.629
SNX16
Sorting nexin 16.
      
 0.600
SLC66A3
Solute carrier family 66 member 3.
      
 0.598
ENSPCLP00000014864
annotation not available
   
 
 0.588
TMED2
Transmembrane p24 trafficking protein 2.
   
 
 0.580
DOLPP1
Dolichyldiphosphatase 1.
      
 0.577
TIRAP
TIR domain containing adaptor protein.
      
 0.571
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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