Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
USP3Ubiquitin specific peptidase 3. (525 aa)    
Predicted Functional Partners:
ENSPCLP00000006054
annotation not available
    
 0.852
ENSPCLP00000008066
annotation not available
    
 0.852
TAF9
TATA-box binding protein associated factor 9.
    
 0.779
TADA3
Transcriptional adaptor 3.
    
 0.778
TAF10
TATA-box binding protein associated factor 10.
    
 0.775
TRRAP
Transformation/transcription domain associated protein.
    
 0.762
UBA52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.744
ENY2
ENY2 transcription and export complex 2 subunit.
    
 0.733
TADA2B
Transcriptional adaptor 2B.
    
 0.710
EIF3I
Eukaryotic translation initiation factor 3 subunit I.
    
   0.703
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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