Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LTBP1Latent transforming growth factor beta binding protein 1. (1656 aa)    
Predicted Functional Partners:
TGFB2
Transforming growth factor beta 2.
    
 0.969
TGFB3
Transforming growth factor beta 3.
   
 0.969
THBS1
Thrombospondin 1.
   
 
 0.941
ENSPCLP00000019909
annotation not available
    
 0.888
FKBP10
FKBP prolyl isomerase 10.
    
 
 0.564
COL6A2
Collagen type VI alpha 2 chain.
   
 0.559
TIMP2
TIMP metallopeptidase inhibitor 2.
     
 0.551
PRRX1
Paired related homeobox 1.
    
 
 0.523
LTBP2
Latent transforming growth factor beta binding protein 2.
     
  0.495
PRRX2
Paired related homeobox 2.
    
 
 0.495
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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