Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
YIPF3Yip1 domain family member 3. (336 aa)    
Predicted Functional Partners:
YIPF4
Yip1 domain family member 4.
    
 
 0.989
YIPF6
Yip1 domain family member 6.
   
 
 0.862
YIPF7
Yip1 domain family member 7.
    
 
 0.813
YIPF5
Yip1 domain family member 5.
    
 
 0.783
YIPF1
Yip1 domain family member 1.
   
  
 0.772
ENSPCLP00000013085
annotation not available
   
 
 0.731
TVP23A
Trans-golgi network vesicle protein 23 homolog A.
   
 
 0.731
ENSPCLP00000006161
annotation not available
    
 
 0.679
TM9SF3
Transmembrane 9 superfamily member 3.
    
   0.663
RBX1
Ring-box 1.
      
 0.653
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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