Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SNX1Sorting nexin 1. (519 aa)    
Predicted Functional Partners:
SNX2
Sorting nexin 2.
  
0.999
ENSPCLP00000004907
annotation not available
   
 
 0.997
VPS26A
VPS26, retromer complex component A.
   
 
 0.995
VPS35
VPS35 retromer complex component.
   
 
 0.993
VPS26B
VPS26, retromer complex component B.
   
 
 0.979
SNX6
Sorting nexin 6.
   
 0.958
SNX5
Sorting nexin 5.
   
 0.955
SNX4
Sorting nexin 4.
   
 
 0.946
SNX27
Sorting nexin 27.
    
 
 0.918
HGS
Hepatocyte growth factor-regulated tyrosine kinase substrate.
   
 
 0.881
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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