Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
CMTR1Cap methyltransferase 1. (830 aa)    
Predicted Functional Partners:
DHX15
DEAH-box helicase 15.
   
 
 0.973
RNGTT
RNA guanylyltransferase and 5'-phosphatase.
    
 
 0.920
CCDC92
Coiled-coil domain containing 92.
      
 0.605
PNRC1
Proline rich nuclear receptor coactivator 1.
      
 0.595
NXN
Nucleoredoxin.
      
 0.557
SUPT7L
SPT7 like, STAGA complex gamma subunit.
      
 0.555
TRMT44
tRNA methyltransferase 44 homolog.
      
 0.555
SMDT1
Single-pass membrane protein with aspartate rich tail 1.
      
 0.555
HSP90B1
Heat shock protein 90 beta family member 1.
      
 0.554
SYDE2
Synapse defective Rho GTPase homolog 2.
      
 0.554
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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