Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TPM1Tropomyosin 1. (326 aa)    
Predicted Functional Partners:
TNNT2
Troponin T2, cardiac type.
   
 0.982
TNNI3
Troponin I3, cardiac type.
   
 0.976
ACTC1
Actin alpha cardiac muscle 1.
   
 0.962
ENSPCLP00000007975
annotation not available
   
 0.939
MYL1
Myosin light chain 1.
   
 0.846
TNNI2
Troponin I2, fast skeletal type.
   
 0.808
ENSPCLP00000005946
annotation not available
   
 0.780
TNNI1
Troponin I1, slow skeletal type.
   
 0.775
ENSPCLP00000013609
annotation not available
   
 0.762
TNNT3
Troponin T3, fast skeletal type.
   
 0.762
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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