Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
TIMP4TIMP metallopeptidase inhibitor 4. (181 aa)    
Predicted Functional Partners:
FBN1
Fibrillin 1.
     
 0.768
MMP15
Matrix metallopeptidase 15.
    
 0.746
MMP9
Matrix metallopeptidase 9.
    
 0.744
HPX
Hemopexin.
    
 0.711
ENSPCLP00000008758
annotation not available
    
 0.639
MMP27
Matrix metallopeptidase 27.
    
 0.637
MMP1
Matrix metallopeptidase 1.
    
 0.632
ENSPCLP00000008764
annotation not available
    
 0.624
ENSPCLP00000008765
annotation not available
    
 0.623
FBN3
Fibrillin 3.
     
 0.618
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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