Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SRBD1S1 RNA binding domain 1. (978 aa)    
Predicted Functional Partners:
IWS1
Interacts with SUPT6H, CTD assembly factor 1.
   
 0.755
RCAN1
Regulator of calcineurin 1.
    
   0.743
ZBTB40
Zinc finger and BTB domain containing 40.
    
 
 0.712
ADGRL3
Adhesion G protein-coupled receptor L3.
      
 0.707
ENSPCLP00000014096
annotation not available
    
   0.675
SUPT5H
SPT5 homolog, DSIF elongation factor subunit.
   
 0.672
SUPT4H1
SPT4 homolog, DSIF elongation factor subunit.
    
 0.669
ZNF276
Zinc finger protein 276.
    
 
 0.658
ATP11B
ATPase phospholipid transporting 11B (putative).
  
  
 0.654
PCMT1
protein-L-isoaspartate (D-aspartate) O-methyltransferase.
      
 0.653
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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