Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LRPPRCLeucine rich pentatricopeptide repeat containing. (1371 aa)    
Predicted Functional Partners:
SLIRP
SRA stem-loop interacting RNA binding protein.
   
 0.997
VDAC1
Voltage dependent anion channel 1.
    
 
 0.901
CHCHD1
Coiled-coil-helix-coiled-coil-helix domain containing 1.
    
 
 0.860
PTCD3
Pentatricopeptide repeat domain 3.
   
 
 0.855
NCBP1
Nuclear cap binding protein subunit 1.
   
 
 0.853
MRPL58
Mitochondrial ribosomal protein L58.
    
 
 0.837
MRPL45
Mitochondrial ribosomal protein L45.
    
 
 0.820
NUP205
Nucleoporin 205.
   
  
 0.802
ENSPCLP00000020346
annotation not available
    
 
 0.788
MRPL48
Mitochondrial ribosomal protein L48.
    
 
 0.786
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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