Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
KDM3ALysine demethylase 3A. (1325 aa)    
Predicted Functional Partners:
KDM5A
Lysine demethylase 5A.
      
 0.556
ENSPCLP00000008718
annotation not available
      
 0.460
ENSPCLP00000010726
annotation not available
    
 0.433
KDM4B
Lysine demethylase 4B.
     
 0.423
SFI1
SFI1 centrin binding protein.
      
 0.412
RBKS
Ribokinase.
      
 0.411
KDM7A
Lysine demethylase 7A.
     
 0.409
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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