Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
REEP1Receptor accessory protein 1. (204 aa)    
Predicted Functional Partners:
REEP2
Receptor accessory protein 2.
    
 
 0.974
REEP3
Receptor accessory protein 3.
    
 
 0.885
CAV3
Caveolin 3.
    
   0.725
ZFYVE27
Zinc finger FYVE-type containing 27.
    
 
 0.693
DAZAP2
DAZ associated protein 2.
    
   0.692
WASHC5
WASH complex subunit 5.
      
 0.688
SPAST
Spastin.
   
  
 0.659
MEGF11
Multiple EGF like domains 11.
      
 0.652
ATL1
Atlastin GTPase 1.
    
 
 0.610
ATL2
Atlastin GTPase 2.
    
 
 0.608
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
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