STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSPCLP00000001730annotation not available (736 aa)    
Predicted Functional Partners:
USP7
Ubiquitin specific peptidase 7.
    
 0.990
ERCC8
ERCC excision repair 8, CSA ubiquitin ligase complex subunit.
    
 
 0.981
LEO1
LEO1 homolog, Paf1/RNA polymerase II complex component.
    
 
 0.927
ERCC6
ERCC excision repair 6, chromatin remodeling factor.
    
 
 0.905
GTF2H1
General transcription factor IIH subunit 1.
    
 
 0.901
USP40
Ubiquitin specific peptidase 40.
    
 0.802
DDB1
Damage specific DNA binding protein 1.
    
 
 0.781
WDR61
WD repeat domain 61.
    
 
 0.747
ENSPCLP00000016470
annotation not available
    
 
 0.720
POLR2F
RNA polymerase II subunit F.
    
 
 0.704
Your Current Organism:
Phasianus colchicus
NCBI taxonomy Id: 9054
Other names: P. colchicus, Ring-necked pheasant, common pheasant
Server load: low (38%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.